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COSMOS-tutorial1 months ago
Installation and dependency | Introduction | Tutorial section: signaling to metabolism | Tutorial section: metabolism to signaling | Tutorial section: Merge forward and backward networks and visualise network | Tutorial section: Over Representation Analysis
MOON data-to-PKN mapping principles1 months ago
Scope | The basic MOON cases | Direct inputs, footprints, gates, and annotations | RNA | Total proteomics | Phosphoproteomics | Metabolomics | DNA sequencing and genetic lesions | Knockdowns, knockouts, and imposed perturbations | Timepoint alignment across omics | A practical checklist | Further implementation notes
MOFA to COSMOS tutorial7 months ago
NCI60 tutorial2 years ago
Training Signalling Pathway Maps to Biochemical Data with Logic-Based Ordinary Differential Equations3 years ago
Introduction | Installation | Quick Start | Crossvalidation
PROGENy pathway signatures4 years ago
Introduction | Activity estimation | Load | Exploration